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TOP > About the Species(Nicotiana tabacum var. TN90) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Nicotiana tabacum

CDS Sequence

CDS ID

lcl|NW_015819633.1_cds_XP_016500124.1_13981
CDS Infomation

[gene=LOC107818598] [db_xref=GeneID:107818598] [protein=aspartic proteinase-like] [protein_id=XP_016500124.1] [location=complement(join(40027..40111,40293..40381,41176..41295,41357..41510,41618..41682,41811..41924,42564..42628,42753..42792,42875..43043,43236..43348,43423..43517,44594..44654,44747..45109))] [gbkey=CDS]
Sequence

ATGGGAGCAAAAGTATTTCTTGTTGCCCTGTTTCTCTCAGCACTGCTCTTTCCTTTGGCC
TCCTCATCCAATGATGGCTTGATGAGAATTGGCTTGAAAAAAATGAAATTTGATCAAAAT
AACCGGCTTGCTGCACGCATTGAGTCAAAGGAAGGGGACGTTTTGAGGGCGTCTATTAGG
AAGTATAACTTCCGTGGTAAACTCGGGGACTCTGAGGATACAGACATTGTAGCACTGAAG
AACTATATGGATGCTCAATATTTTGGGGAGATTGGTGTAGGCACTCCACCTCAGAAGTTC
ACTGTAATCTTTGACACTGGTAGCTCGAATTTGTGGGTGCCGTCGTCGAAGTGCTATTTC
TCTGTTCCCTGTTTCTTTCATTCCAAGTTCAAATCAAGCGAATCAAGTACTTATAAGAAG
AATGGGAAGTCTGCTGCAATTCAGTATGGTAGTGGAGCTATTTCTGGATTCTTCAGTCAA
GACAACGTCAAAGTTGGTGACCTTGTTGTAACAGATCAGGAATTTATTGAGGCAACCAGA
GAACCCAGCGTGACATTTTTGGTAGCCAAGTTTGACGGTATATTGGGTCTTGGATTCCAG
GAGATTTCAGTTGGCAATGCTGTTCCAGTTTGGTACAACATGGTCCAACAGGGTCTTATC
AAGGATCCTGTCTTCTCATTTTGGCTCAACCGAAATACAGAGGAAGAACAAGGCGGAGAA
ATCGTGTTTGGTGGGGTTGATCCTAATCACTATAAGGGAGAAATCACTTATGTCCCAGTC
ACACACAAAGGTTATTGGCAGTTTGATATGGGTGATGTTCTTATCGAGGGTAAAGCTACT
GGTTACTGTGAAAGTGGGTGCTCTGCAATAGCGGATTCAGGGACTTCTCTCTTGGCTGGT
CCAACGACCATAATCACTATGATTAATCAAGCCATTGGAGCCTCTGGAGTTGCTAGCCAA
CAATGCAAATCTGTAGTGGAGCAGTACGGGCAGACAATCATGGATTTGCTGTTAGCAGAG
GCACATCCAAAGAAGATTTGCTCACAGGTTGGAGTATGCACTTTCGATGGAAACCGCGGA
GTTAGTATGGGAATTGAGAGTGTTGTAGACGAGAAAGCTGGCAGATCCACAGGACTGCAG
GATGGTATGTGCTCTGCTTGTGAAATGGCGGTCATATGGATGGAGAATCAACTGAGACAA
AACCAGACTCAAGATCGCATATTAAACTATGTGAATGAGCTTTGCGAGCGTCTCCCAAGC
CCATTGGGGGAATCAGCTGTTGACTGTGGAAAGCTTTCTTCAATGCCTACAGTCTCTTTC
ACAATTGGTGGCAAAGTTTTTGACCTCGTCCCGAAGGAGTACATACTCAAGGTGGGCGAG
GGTGCTAAGGCACAGTGTATTAGTGGTTTCACTGGCTTGGACATTCCTCCTCCCCGCGGA
CCACTCTGGATCTTGGGTGATGTTTTCATGGGTCGATATCACACAGTCTTCGATTATGGC
AAACTCAGAGTTGGATTTGCTGAAGCAGCTTAA

Peptide Sequence

PEP ID

XP_016500124.1
PEP Infomation

PREDICTED: aspartic proteinase-like [Nicotiana tabacum]
Sequence

MGAKVFLVALFLSALLFPLASSSNDGLMRIGLKKMKFDQNNRLAARIESKEGDVLRASIR
KYNFRGKLGDSEDTDIVALKNYMDAQYFGEIGVGTPPQKFTVIFDTGSSNLWVPSSKCYF
SVPCFFHSKFKSSESSTYKKNGKSAAIQYGSGAISGFFSQDNVKVGDLVVTDQEFIEATR
EPSVTFLVAKFDGILGLGFQEISVGNAVPVWYNMVQQGLIKDPVFSFWLNRNTEEEQGGE
IVFGGVDPNHYKGEITYVPVTHKGYWQFDMGDVLIEGKATGYCESGCSAIADSGTSLLAG
PTTIITMINQAIGASGVASQQCKSVVEQYGQTIMDLLLAEAHPKKICSQVGVCTFDGNRG
VSMGIESVVDEKAGRSTGLQDGMCSACEMAVIWMENQLRQNQTQDRILNYVNELCERLPS
PLGESAVDCGKLSSMPTVSFTIGGKVFDLVPKEYILKVGEGAKAQCISGFTGLDIPPPRG
PLWILGDVFMGRYHTVFDYGKLRVGFAEAA

Transcript Sequence

Gene sequence data has not been registered.